Bioinformatics Tools

Below is a list of all the Bioinformatics Tools developed by the H3ABioNet Consortium.

TADA - Targeted Amplicon Diversity Analysis using DADA2

We are working on a DSL2 implementation using the nf-core tools on separate branches. Based on...

The African microbiome portal (AMP) is in development under H3Africa initiative to provide a...

An insight into genome-wide nucleosome positions is required to understand the local regulation of...

Modern computing has enabled research that was previously considered unfeasible. Parallel...

The Human Mutation Analysis (HUMA) web server has been developed as a freely available platform...

The admixture mapping tools include a suite of tools for use on multi-way admixed populations to...

Genesis can be used to display screen and publication quality pictures of population PCA and...

RDP will, without any prior information on the names and numbers of ancestral populations,...

Galaxy: web-based workflow platform
MD-TASK: tool suite for analysing molecular dynamics trajectories using network analysis and PRS
MODE-TASK: collection of tools for analysing normal modes and performing principal component analysis
PRIMO: an interactive homology modeling pipeline.

1000 Genomes project
GWAS Central: formerly HGBASE, HGVbase and HGVbaseG2P
dbGaP: NIH database of Genotypes and Phenotype studies
EGA: European Genome-phenome Archive
BioQ
SANCDB: this is a free, online database containing compounds isolated from the plant and marine life in and around South Africa.

SEQanswers: a discussion forum and information source for next generation sequencing
SBS: Swedish Bioinformatics Support
BioStar: a StackExchange based question/answer site for bioinformatics
Rosalind: Rosalind is a platform for learning bioinformatics through problem solving.
ML_Directory: This is a document that provides a list of tools, platforms and packages related to machine learning
ML_Terms: This is a website that provide information about machine learning terms glossary within the H3ABioNet