Developing bioinformatics tools for the analysis of different genomics data types
Tools & Services
Bioinformatics Tools
Below is a list of all the Bioinformatics Tools developed by the H3ABioNet Consortium.
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NUCPOS: Bioinformatics tool suite to analyse nucleosome positions in genomes
An insight into genome-wide nucleosome positions is required to understand the local regulation of...
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Job Management System (JMS) for High Performance Computing and Cluster Management
Modern computing has enabled research that was previously considered unfeasible. Parallel...
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Human Mutational Analysis web server
The Human Mutation Analysis (HUMA) web server has been developed as a freely available platform...
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Admixture Mapping Tools
The admixture mapping tools include a suite of tools for use on multi-way admixed populations to...
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Genesis: PCA and Admixture plot viewer and publication quality image generator
Genesis can be used to display screen and publication quality pictures of population PCA and...
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Recombination Detection Program (RDP)
RDP will, without any prior information on the names and numbers of ancestral populations,...
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Machine Learning Glossary
To access the ML glossary, please CLICK ON THIS LINK: This website aims to provide information...
External Tools
Online tools
- Galaxy: web-based workflow platform
- MD-TASK: tool suite for analysing molecular dynamics trajectories using network analysis and PRS
- MODE-TASK: collection of tools for analysing normal modes and performing principal component analysis
- PRIMO: an interactive homology modeling pipeline.
Data sources
- 1000 Genomes project
- GWAS Central: formerly HGBASE, HGVbase and HGVbaseG2P
- dbGaP: NIH database of Genotypes and Phenotype studies
- EGA: European Genome-phenome Archive
- BioQ
- SANCDB: this is a free, online database containing compounds isolated from the plant and marine life in and around South Africa.
Online information sources
- SEQanswers: a discussion forum and information source for next generation sequencing
- SBS: Swedish Bioinformatics Support
- BioStar: a StackExchange based question/answer site for bioinformatics
- Rosalind: Rosalind is a platform for learning bioinformatics through problem solving.
- ML_Directory: This is a document that provides a list of tools, platforms and packages related to machine learning
- ML_Terms: This is a website that provide information about machine learning terms glossary within the H3ABioNet