Publications
Communications
Selected Recent Publications
(a) H3ABioNet Related Resources
(b) Training and Education Papers
(c) Research Through H3ABioNet and Collaborations
(d) Prospective Papers and Commentaries
- Brandenburg J.T et al. H3AGWAS: a portal workflow for genome wide association studies
- Othman H et al. African Genomic Medicine Portal: A Web Portal for Biomedical Applications
- Fadlelmola FM et al. H3ABioNet genomic medicine and microbiome data portals hackathon proceedings
- Ghouila A et al. Hackathons as a means of accelerating scientific discoveries and knowledge transfer
- Brown DK et al. HUMA: A platform for the analysis of genetic variation in humans
- Ahmed A et al. Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience
- Adekile et al., The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation. Database : the journal of biological databases and curation
- Brown DK, Tastan Bishop Ö . HUMA: A platform for the analysis of genetic variation in humans
- Baichoo S et al. Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to supportAfrican genomics
- Kumuthini et al. Proposed Guideline for Minimum Information Stroke Research and Clinical Data Reporting
- Brown DK et al. MD-TASK: a software suite for analyzing molecular dynamics trajectories
- Mugo JW et al. A multi-scenario genome-wide medical population genetics simulation framework.
(b) Training and Education Papers
- Makolo et al, Leavaring H3Africa Scholarly Publications for Technolog-Enhanced Bioinformatics Education
- Moore B et al. Correction: Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries
- Ras V et al. Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa
- Fadlelmola FM et al. Ten simple rules for organizing a webinar series.
- Rafael CN et al. Highlights of the second ISCB Student Council Symposium in Africa, 2017
- Mulder N et al. The development and application of bioinformatics core competencies to improve bioinformatics training and education
- Gurwitz KT et al Designing a course model for distance-based online bioinformatics training in Africa: The H3ABioNet experience
- Ahmed AE, et al. Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience AAS open research
- Ghouila A et al. Hackathons as a means of accelerating scientific discoveries and knowledge transfer
(c) Research Through H3ABioNet and Collaborations
- Harrison V et al. Strongylopus grayii tadpole blastema extract exerts cytotoxic effects on embryonal rhabdomyosarcoma cells
- Mohan D et al. Optimising the reach of mobile health messaging programmes: an analysis of system generated data for the Kilkari programme across 13 states in India
- Adebamowo CA et al. Polygenic risk scores for CARDINAL study
- Mazandu GK et al. The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation
- Tata RB et al. Slipknot or Crystallographic Error: A Computational Analysis of the Plasmodium falciparum DHFR Structural Folds
- Soremekun OS et al. Transcription-translation error: In-silico investigation of the structural and functional impact of deleterious single nucleotide polymorphisms in GULP1 gene.
- Sinkala M et al. Integrated molecular characterisation of the MAPK pathways in human cancers reveals pharmacologically vulnerable mutations and gene dependencies. Communications biology.
- Sinkala M, Mulder N, Martin D. Machine Learning and Network Analyses Reveal Disease Subtypes of Pancreatic Cancer and their Molecular Characteristics
- Sinkala M et al. Metabolic gene alterations impact the clinical aggressiveness and drug responses of 32 human cancers
- Chimusa ER et al. Dating admixture events is unsolved problem in multi-way admixed populations
- Nel M et al. C9orf72 repeat expansions in South Africans with amyotrophic lateral sclerosis
- Mulder N et al. Genomic Research Data Generation, Analysis and Sharing – Challenges in the African Setteting
- Ben Hamda C et al. A common molecular signature of patients with sickle cell disease revealed by microarray meta-analysis and a genomewide association study
- Choudhury A et al. Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans
- Nkya S et al. Fetal Hemoglobin is Associated with Peripheral Oxygen Saturation in Sickle Cell Disease in Tanzania
- Musicha P et al. Trends in antimicrobial resistance in bloodstream infection isolates at a large urban hospital in Malawi (1998-2016): a surveillance study
- Unver T et al. Genome of wild olive and the evolution of oil biosynthesis.
- Qrafli M et al. New variant identified in major susceptibility locus to tuberculosis on chromosomal region 8q12-q13 in Moroccanpopulation: a case control study
- Choudhury et al. Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans
- Urio F et al., High prevalence of individuals with low concentration of fetal hemoglobin in F-cells in sickle cell anemia in Tanzania
- Choudhury, et al., High-Depth African Genomes Inform Human Migration and Health
(d) Prospective Papers and Commentaries
- Hamdi Y, Mulder N, Abdelhak S. Women in Systems Science and Gender Parity: Why and How to Democratize the "Technology, Innovation, and Society Nexus"
- Jongeneel CV et al. A View on Genomic Medicine Activities in Africa: Implications for Policy
- Allali I et al. Correction to: Human microbiota research in Africa: a systematic review reveals gaps and priorities for future research.
- Kumuthini J et al. The clinical utility of polygenic risk scores in genomic medicine practices: a systematic review
- Jongeneel et al Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network
- Hamdi Y et al. Human OMICs and Computational Biology Research in Africa: Current Challenges and Prospects.
- Radouani F et al. A review of clinical pharmacogenetics Studies in African populations
- Alosaimi S et al. A broad survey of DNA sequence data simulation tools
- Awany D et al. Host and Microbiome Genome-Wide Association Studies: Current State and Challenges.
- Geza E et al. A comprehensive survey of models for dissecting local ancestry deconvolution in human genome
- Tiffin N. Potential risks and solutions for sharing genome summary data from African populations
- Agamah FE et al. Computational/in silico methods in drug target and lead prediction.
- Mulder N et al. H3Africa: current perspectives
- Lemoine F et al. Renewing Felsenstein’s phylogenetic bootstrap in the era of big data.
- Shoko R et al. Strategies and opportunities for promoting bioinformatics in Zimbabwe.
- Dandara C, et al. African Pharmacogenomics Consortium: Consolidating pharmacogenomics knowledge, capacity development and translation in Africa
