The Ensembl project at www.ensembl.org provides a comprehensive and integrated source of annotation of mainly vertebrate genome sequences. This 1-day workshop offers participants the possibility of gaining hands-on experience in the use of the Ensembl genome browser but also provides them with the necessary background information. Our sister project at www.ensemblgenomes.org can also be covered if participants are working with bacteria, plants, fungi, protists or (invertebrate) metazoa.
Wet-lab researchers and bioinformaticians
Objectives: After this workshop participants should be able to:
- view genomic regions and manipulate the view to add features they are interested in.
- explore information about genes and their sequences, and gene data in bulk using BioMart.
- analyse genomic variants and associated phenotypes and their own variation data using the VEP.
- view homologous genes and genomic regions, functional elements involved in gene regulation and their activity in different cell types.
Classroom applications
Participant applications
Syllabus and Tools
Morning: Introduction to Ensembl and Ensembl genes. Viewing genes and locations in the browser. Data export with BioMart.
Afternoon: The afternoon sessions depend on the participants' interest. We can cover genetic variation, comparative genomics and gene regulation, depending on what you express an interest in when you register.
None
Training materials used for this course were not directly produced by H3ABioNet but may be accessed here: http://training.ensembl.org/events/2019/2019-05-20-CapeTown. Please note, these materials may be governed by different sharing/re-use policies, and you are encouraged to follow the policies of the external providers regarding material re-use and/or sharing.
