H3ABioNet Postgraduate Bioinformatics Workshop 21st April-26th May 2014 Covenant University Bioinformatics Research (CUBRe), Ota Nigeria

    Workshop Training materials are available at: http://training.h3abionet.org/postgraduate_workshop_2014/

    H3ABioNet Postgraduate workshop overview

    The H3Africa initiative is aimed at studying the genomic and environmental determinants of disease in Africa. The goals of H3Africa are to enhance the necessary genomic expertise among African scientists and to encourage collaborations between African investigators by supporting infrastructure development and research projects.

    H3ABioNet aims to create a sustainable African Bioinformatics Network to support and promote the development of bioinformatics capacity within Africa, by training the next generation of students in bioinformatics. To achieve this vision, H3ABioNet will be hosting a five week training workshop in bioinformatics aimed at students registered for a postgraduate academic degree in bioinformatics or a related discipline from the H3ABioNet Nodes and H3Africa projects from the21st of April to the 26th of May 2014 at the Covenant University Bioinformatics Research (CUBRe) unit in Ota, Nigeria.

    The H3ABioNet Postgraduate workshop is aimed at developing a core set of specialised skills amongst registered postgraduate students within H3ABioNet and H3Africa projects to provide them with practical training in a variety of introductory bioinformatics topics to complement their ongoing research and education and strengthen the bioinformatics capacity within their Node/group.

    The H3ABioNet Postgraduate workshop will run over 5 weeks (6 days a week) and will cover both theoretical and practical aspects of a range of core bioinformatics modules which include:

    • Introduction to Linux
    • Python programming
    • Introduction to bioinformatics resources
    • Biostatistics and R
    • Database creation and data mining
    • Bioinformatics workflows and pipelines
    • Introduction to NGS tools and variant calling

    H3ABioNet Postgraduate workshop objectives

    The H3ABioNet 2014 Postgraduate workshop is aimed at providing post graduate students registered for an academic degree and are working on research projects with a significant component of bioinformatics with the necessary grounding in core bioinformatics topics. The H3ABioNet 2014 Postgraduate workshop aims to equip these individuals with the necessary skills to continue their ongoing bioinformatics education, further learn on topics that are of interest to them and apply the skills learnt to their academic research projects.

    H3ABioNet Postgraduate workshop outline

    The H3ABioNet 2014 Postgraduate workshop comprises a number of modules that will span a 5 week period and include both theoretical lectures and practical sessions for registered students to learn and develop their theoretical and practical skills and provide a foundation for participants to develop their bioinformatics knowledge. A tentative timetable for the H3ABioNet 2014 Postgraduate workshop is provided below:



    Topic taught

    Period Topic is Taught

    Dates for Topic being taught

    Dr Oyelade and Mrs Itunu Isewon

    Introduction to linux and Python programing

    Week 1

    21st April to 25th April

    Shaun Aron

    Introduction to bioinformatics resources, Sequence alignment, and proteomics resources

    Week 2

    28th April to 2nd May

    Dr. Jean-Baka Domelevo Entfellner

    Introduction to Biostatistics

    Week 3

     5th May to 9th May

    Dr. Takafumi Yamaguchi and Dr. Lawrence Heisler


    Week 4

    12th May to 16th May

    Dr. Segun Fatumo


    Week 4

    16th May, 19th May

    Dr. Kais Ghedira and Dr. Amel Ghoulia

    Databases, mining and analysis workflows / pipelines

    Week 5

    19th May to 23rd May

    Dr Oyelade and Miss Itunu Ewejobi

    Python programming for 3 hours every day

    Throughout the workshop

    28th April to 24th May

    H3ABioNet Postgraduate workshop prerequisites

    Successful applicants would be required to complete some prerequisites which may include on-line courses prior to the commencement of the H3ABioNet 2014 Postgraduate workshop. Participants would be notified of these requirements upon admission.

    How to apply

    To apply to attend the course please complete the application form found here:http://surveys.h3abionet.org/postgrad2014

    The deadline for applications for the H3ABioNet 2014 Postgraduate workshop is the 19th of March, 2014.

    Please ensure that all required information is completed on the application and that a motivation letter from your PI is attached with your application.

    Successful candidates will be notified of their acceptance to the H3ABioNet 2014 Masters workshop by the 25th of March, 2014.

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